Image |
Bib Reference |
Publication Type |
2025 |
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Henry Ehlers , Nicolas Brich , Michael Krone, Martin Nöllenburg, Jiacheng Yu, Hiroaki Natsukawa , Xiaoru Yuan, Hsiang-Yun Wu![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
An introduction to and survey of biological network visualization
COMPUTERS & GRAPHICS-UK, 126, February 2025. |
Journal Paper (without talk) |
2023 |
![](https://www.cg.tuwien.ac.at/research/publications/2023/eschner-2023-ims/eschner-2023-ims-teaser:thumb100.png) |
Johannes Eschner , Peter Mindek, Manuela Waldner![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Illustrative Motion Smoothing for Attention Guidance in Dynamic Visualizations
Computer Graphics Forum, 42(3):361-372, June 2023. [ paper] [ video] |
Journal Paper with Conference Talk |
2022 |
![](https://www.cg.tuwien.ac.at/research/publications/2022/eschner-blur-2022/eschner-blur-2022-teaser:thumb100.png) |
Johannes Eschner![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Generating Molecular Motion Blur Videos for a User Study
[ project report] |
Student Project |
![](https://www.cg.tuwien.ac.at/research/publications/2022/sMolBoxes_2022/sMolBoxes_2022-teaser:thumb100.png) |
Pavol Ulbrich, Manuela Waldner , Katarína Furmanová, Sergio M. Margues, David Bednář, Barbora Kozlikova, Jan Byska
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration
IEEE Transactions on Visualization and Computer Graphics:1-10, October 2022. [arxiv] |
Journal Paper with Conference Talk |
2021 |
![](https://www.cg.tuwien.ac.at/research/publications/2021/Alharbi_2021/Alharbi_2021-Image:thumb100.png) |
Ruwayda Alharbi, Ondrej Strnad, Laura R. Luidolt , Manuela Waldner , David Kouřil, Ciril Bohak, Tobias Klein, Eduard Gröller , Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments
IEEE Transactions on Visualization and Computer Graphics:1-16, December 2021. [ Image] [ Paper] |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2021/kouril-2021-molecumentary/kouril-2021-molecumentary-overview:thumb100.png) |
David Kouřil, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, Eduard Gröller , Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization
IEEE Transactions on Visualization and Computer Graphics, 1:1-1, November 2021. |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2021/kouril-2021-phdthesis/kouril-2021-phdthesis-teaser:thumb100.png) |
David Kouřil
Interactive Visualization of Dense and Multi-Scale Data for Science Outreach
Supervisor: Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Duration: March 2017 — April 2021
[ teaser] [ thesis] |
PhD-Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2021/Sarkis_2021/Sarkis_2021-Image:thumb100.png) |
Sarkis Halladjian, David Kouřil, Haichao Miao, Eduard Gröller , Ivan Viola , Tobias Isenberg
Multiscale Unfolding: Illustratively Visualizing the Whole Genome at a Glance
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS , 3:1-13, March 2021. [ Image] [ Paper] |
Journal Paper (without talk) |
|
Henry Ehlers![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Unknown
Supervisor: Renata Raidou![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Duration: 2021 — 2024
|
Ongoing PhD-Thesis |
2020 |
![](https://www.cg.tuwien.ac.at/research/publications/2020/wu-2020-tvcg/wu-2020-tvcg-image:thumb100.png) |
Hsiang-Yun Wu , Martin Nöllenburg, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Multi-level Area Balancing of Clustered Graphs
IEEE Transactions on Visualization and Computer Graphics (TVCG), x:1-15, November 2020. [ paper] [ video] |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2020/cmolik-2020-tvcg/cmolik-2020-tvcg-image:thumb100.png) |
Ladislav Čmolík, Václav Pavlovec, Hsiang-Yun Wu , Martin Nöllenburg
Mixed Labeling: Integrating Internal and External Labels
IEEE Transactions on Visualization and Computer Graphics (TVCG), x:1-14, September 2020. [ image] [ paper] |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2020/Nowak_2020/Nowak_2020-Image:thumb100.png) |
Milena Nowak
Hierarchical Multi-resolution Data Structure for Molecular Visualization
[ Image] [ Master Thesis] |
Master Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2020/miao_nar_2020/miao_nar_2020-:thumb100.png) |
Elisa De Llano, Haichao Miao, Yasaman Ahmadi, Armanda J Wilson, Morgan Beeby, Ivan Viola , Ivan Barisic
Adenita: interactive 3D modelling and visualization of DNA nanostructures
Nucleic Acids Research, July 2020. |
Journal Paper (without talk) |
|
Renata Raidou , Barbora Kozlikova, Johanna Beyer , Timo Ropinski, Issei Fujishiro
NII Shonan Meeting Report No. 167: Formalizing Biological and Medical Visualization
ISSN 2186-7437
|
Miscellaneous Publication |
![](https://www.cg.tuwien.ac.at/research/publications/2020/Halladjian_2020/Halladjian_2020-scale_trotter:thumb100.png) |
Sarkis Halladjian, Haichao Miao, David Kouřil, Eduard Gröller , Ivan Viola , Tobias Isenberg
ScaleTrotter: Illustrative Visual Travels Across Negative Scales
IEEE Transactions on Visualization and Computer Graphics, 26(1), January 2020. [ paper] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2020/nguyen_2020-covid/nguyen_2020-covid-image:thumb100.png) |
Ngan Nguyen, Ondrej Strnad, Tobias Klein, Ruwayda Alharbi, Peter Wonka , Martina Maritan, Peter Mindek, Ludovic Autin, David Goodsell, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models
IEEE Transactions on Visualization and Computer Graphics, 2020. |
Journal Paper with Conference Talk |
2019 |
![](https://www.cg.tuwien.ac.at/research/publications/2019/klein_2019_PHD/klein_2019_PHD-image:thumb100.png) |
Tobias Klein
Instant Construction of Atomistic Models for Visualization in Integrative Cell Biology
Supervisor: Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Duration: 2016 — 2019
[ image] |
PhD-Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2019/klein_2019_PGG/klein_2019_PGG-teaser:thumb100.png) |
Tobias Klein, Peter Mindek, Ludovic Autin, David Goodsell, Arthur Olson, Eduard Gröller , Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Parallel Generation and Visualization of Bacterial Genome Structures
Computer Graphics Forum, 38(7):57-68, November 2019. |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2019/wu-2019-visworkshop/wu-2019-visworkshop-image:thumb100.png) |
Hsiang-Yun Wu , Martin Nöllenburg, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Graph Models for Biological Pathway Visualization: State of the Art and Future Challenges,
20. October 2019, Vis 2019 Workshop, Canada
[ paper] |
WorkshopTalk |
![](https://www.cg.tuwien.ac.at/research/publications/2019/rinortner_susanne-2019-vpicc/rinortner_susanne-2019-vpicc-image:thumb100.png) |
Susanne Rinortner
Visualizing Protein Interactions in Corresponding Compartments
|
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2019/amirkhanov-2019-manylands/amirkhanov-2019-manylands-Teaser:thumb100.png) |
Aleksandr Amirkhanov, Ilona Kosiuk, Peter Szmolyan, Artem Amirkhanov, Gabriel Mistelbauer, Eduard Gröller , Renata Raidou![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
ManyLands: A Journey Across 4D Phase Space of Trajectories
Computer Graphics Forum, 38(7):191-202, October 2019. [ Paper] [ Video demo] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2019/wu-2019-vcbm/wu-2019-vcbm-image:thumb100.png) |
Hsiang-Yun Wu , Martin Nöllenburg, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Map of Metabolic Harmony
[ image-full] |
Unknown Publication |
![](https://www.cg.tuwien.ac.at/research/publications/2019/Sbardellati-2019-vcbm/Sbardellati-2019-vcbm-image:thumb100.png) |
Maximilian Sbardellati, Haichao Miao, Hsiang-Yun Wu , Eduard Gröller , Ivan Barisic, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Interactive Exploded Views for Molecular Structures
In Proceedings of the 9th Eurographics Workshop on Visual Computing for Biology and Medicine, pages 103-112. September 2019.
[ paper] |
Conference Paper |
|
Haichao Miao
Geometric Abstraction for Effective Visualization and Modeling
Supervisor: Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
|
PhD-Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2019/klein_2019_PMP/klein_2019_PMP-image:thumb100.png) |
Tobias Klein, Ivan Viola , Eduard Gröller , Peter Mindek
Multi-Scale Procedural Animations of Microtubule Dynamics Based on Measured Data
IEEE Transactions on Visualization and Computer Graphics, 26(1):622-632, August 2019. [ paper] |
Journal Paper with Conference Talk |
|
Renata Raidou![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Visual Analytics for the Representation, Exploration and Analysis of High-Dimensional, Multi-Faceted Medical Data
In Biomedical Visualisation, pages 137-162, July 2019
|
Article in a Book |
![](https://www.cg.tuwien.ac.at/research/publications/2019/byska-2019-mdfc/byska-2019-mdfc-teaser:thumb100.png) |
Jan Byska, Thomas Trautner, Sergio Marques, Jiri Damborsky, Barbora Kozlikova, Manuela Waldner![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization
Computer Graphics Forum, 38(3):441-453, June 2019. [ paper] [ video] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2019/miao_nantech_2019/miao_nantech_2019-:thumb100.png) |
Haichao Miao, Elisa De Llano, Ivan Viola , Ivan Barisic
Interactive Visual Analysis for the Design of DNA Nanostructures
Poster shown at NANTECH 2019 – Nucleic Acid Nanotechnology: From Algorithmic Design to Biochemical Applications – Espoo, Finland
(27. May 2019-29. May 2019)
|
Poster |
![](https://www.cg.tuwien.ac.at/research/publications/2019/wu-2019-bmc/wu-2019-bmc-image:thumb100.png) |
Hsiang-Yun Wu , Martin Nöllenburg, Filipa L. Sousa, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Metabopolis: Scalable Network Layout for Biological Pathway Diagrams in Urban Map Style
BMC Bioinformatics, 20(187):1-20, May 2019. [ paper] [video] |
Journal Paper (without talk) |
|
Hsiang-Yun Wu , Haichao Miao, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
From Cells to Atoms - Biological Information Visualization (in Chinese)
TR-193-02-2019-1, March 2019 [ paper] |
Technical Report |
![Multiple color zoom levels.](https://www.cg.tuwien.ac.at/research/publications/2019/waldin-2019-ccm/waldin-2019-ccm-teaser:thumb100.png) |
Nicholas Waldin, Manuela Waldner , Mathieu Le Muzic, Eduard Gröller , David Goodsell, Ludovic Autin, Arthur Olson, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Cuttlefish: Color Mapping for Dynamic Multi‐Scale Visualizations
Computer Graphics Forum, 38(6):150-164, March 2019. [Open Access Article in Wiley Online Library] |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2019/Kugler_2019/Kugler_2019-image:thumb100.png) |
Felix Kugler
Profiling and Optimization of Large Biomolecular Scenes
[ image] [ thesis] |
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2019/unger-2019_vcp/unger-2019_vcp-screenshot:thumb100.png) |
Katharina Unger
Visual Comparison of Organism-Specific Metabolic Pathways
[ CESCG paper] |
Student Project |
![](https://www.cg.tuwien.ac.at/research/publications/2019/Weissenboeck_2019/Weissenboeck_2019-image:thumb100.png) |
Johannes Weissenböck, Bernhard Fröhler, Eduard Gröller , Johann Kastner, Christoph Heinzl
Dynamic Volume Lines: Visual Comparison of 3D Volumes through Space-filling Curves
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS, 25(1):1040-1049, January 2019. [ image] |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2019/Miao_2019/Miao_2019-image:thumb100.png) |
Haichao Miao, Tobias Klein, David Kouřil, Peter Mindek, Karsten Schatz, Eduard Gröller , Barbora Kozlikova, Tobias Isenberg, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Multiscale Molecular Visualization
Journal of Molecular Biology, 6(31):1049-1070, January 2019. [ Paper] |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2019/manylands_award/manylands_award-Image 2:thumb100.png) |
Aleksandr Amirkhanov, Ilona Kosiuk, Peter Szmolyan, Artem Amirkhanov, Gabriel Mistelbauer, Eduard Gröller , Renata Raidou![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
EG VCBM 2019 Image Contest Award, people's choice—ManyLands: A Journey Across 4D Phase Space of Biological Systems
|
Unknown Publication |
2018 |
![](https://www.cg.tuwien.ac.at/research/publications/2018/mindek-2018-fyi/mindek-2018-fyi-teaser:thumb100.png) |
Peter Mindek
Molecular Visualization,
10. November 2018, FYI: Informationsdesign Konferenz Wien, Nordbahn-Halle, Vienna
|
WorkshopTalk |
![](https://www.cg.tuwien.ac.at/research/publications/2018/sbardellati_ba_2018/sbardellati_ba_2018-image:thumb100.png) |
Maximilian Sbardellati
Interactive Exploded Views for Presenting DNA Nano-Structures
[ image] |
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2018/trautner-2018-imd/trautner-2018-imd-image:thumb100.png) |
Thomas Trautner
Importance-Driven Exploration of Molecular Dynamics Simulations
[ image] [ Poster] |
Master Thesis |
|
Nicolas Grossmann, Thomas Köppel, Eduard Gröller , Renata Raidou![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
VisualFlatter - Visual Analysis of Distortions in the Projection of Biomedical Structures
Eurographics Proceedings, September 2018. |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2018/Miao2018FDN/Miao2018FDN-image:thumb100.png) |
Elisa De Llano, Haichao Miao, Tobias Isenberg, Eduard Gröller , Ivan Viola , Ivan Barisic
A Preview to Adenita: Visualization and Modeling of DNA Nanostructures
Poster shown at 3rd Functional DNA Nanotechnology Workshop
( 6. June 2018- 8. June 2018)
|
Poster |
![](https://www.cg.tuwien.ac.at/research/publications/2018/miao2018Dimsum/miao2018Dimsum-Image:thumb100.png) |
Haichao Miao, Elisa De Llano, Tobias Isenberg, Eduard Gröller , Ivan Barisic, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
DimSUM: Dimension and Scale Unifying Maps for Visual Abstraction of DNA Origami Structures
Computer Graphics Forum, 37(3), June 2018. [ Paper] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2018/wu-2018-metabo/wu-2018-metabo-image:thumb100.png) |
Hsiang-Yun Wu , Martin Nöllenburg, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
A Visual Comparison of Hand-Drawn and Machine-Generated Human Metabolic Pathways
Poster shown at EuroVis
( 4. June 2018- 8. June 2018)
[ poster] |
Poster |
![](https://www.cg.tuwien.ac.at/research/publications/2018/Furmanova_2018/Furmanova_2018-image:thumb100.png) |
Katarína Furmanová, Jan Byska, Eduard Gröller , Ivan Viola , Jan J. Paleček, Barbora Kozlikova
COZOID: contact zone identifier for visual analysis of protein-protein interactions
BMC Bioinformatics, (19:125 ):1-25, April 2018. [ image] [ Paper] |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2018/wu-2018-story/wu-2018-story-image:thumb100.png) |
Hsiang-Yun Wu , Martin Nöllenburg, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
The Travel of a Metabolite
submitted to PacificVis 2018 Data Story Telling Contest
[ paper] [ video] |
Miscellaneous Publication |
![](https://www.cg.tuwien.ac.at/research/publications/2018/koch-2018-sso/koch-2018-sso-image:thumb100.png) |
Thomas Bernhard Koch
Semantic Screen-Space Occlusion for Multiscale Molecular Visualization
[ Bachelor Thesis] |
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2018/Strohmayer-2018-BT/Strohmayer-2018-BT-image:thumb100.png) |
Julian Strohmayer
A Visual Analytics Approach to Hypocotyl/Root Transition Detection in Arabidopsis Thaliana
[ image] |
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2018/miao_tvcg_2018/miao_tvcg_2018-image:thumb100.png) |
Haichao Miao, Elisa De Llano, Johannes Sorger, Yasaman Ahmadi, Tadija Kekic, Tobias Isenberg, Eduard Gröller , Ivan Barisic, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Multiscale Visualization and Scale-adaptive Modification of DNA Nanostructures
IEEE Transactions on Visualization and Computer Graphics, 24(1), January 2018. [ paper] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2018/lipp-2017-mgpu/lipp-2017-mgpu-image:thumb100.png) |
Lukas Lipp![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Visualization of Fiber Orientation in Glass Fiber Reinforced Polymers
[ Bachelor Thesis] |
Bachelor Thesis |
|
Radu Jianu, Martin Krzywinski, Luana Micallef, Hsiang-Yun Wu![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Mapifying the Genome, Scalable Set Visualizations (Dagstuhl Seminar 17332)
TR-193-02-2018-2, 2018 [ paper] |
Technical Report |