Publications

Publication list of Ivan ViolaORCID iD:
136 Publications found:
Image Bib Reference Publication Type
2024
Paolo BoffiORCID iD, Alexandre Kouyoumdjian, Manuela WaldnerORCID iD, Pier Luca LanziORCID iD, Ivan ViolaORCID iD
BaggingHook: Selecting Moving Targets by Pruning Distractors Away for Intention-Prediction Heuristics in Dense 3D Environments
In 2024 IEEE Conference Virtual Reality and 3D User Interfaces (VR), pages 913-923. 2024.
Conference Paper
2021
Ruwayda Alharbi, Ondrej Strnad, Laura R. LuidoltORCID iD, Manuela WaldnerORCID iD, David Kouřil, Ciril Bohak, Tobias Klein, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments
IEEE Transactions on Visualization and Computer Graphics:1-16, December 2021. [Image] [Paper]
Journal Paper (without talk)
David Kouřil, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization
IEEE Transactions on Visualization and Computer Graphics, 1:1-1, November 2021.
Journal Paper with Conference Talk
Quiong Zeng, Yinqiao Zhao, Teng Zhang, Yi Ciao, Changhe TU, Ivan ViolaORCID iD, Yunhai Wang
Data-Driven Colormap Adjustment for Exploring Spatial Variations in Scalar Fields
IEEE Transactions on Visualization and Computer Graphics, 9:1-15, September 2021. [Image] [Paper]
Journal Paper (without talk)
Sarkis Halladjian, David Kouřil, Haichao Miao, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Tobias Isenberg
Multiscale Unfolding: Illustratively Visualizing the Whole Genome at a Glance
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS , 3:1-13, March 2021. [Image] [Paper]
Journal Paper (without talk)
Hsiang-Yun WuORCID iD, Aleksandr Amirkhanov, Nicolas Grossmann, Tobias Klein, David Kouřil, Haichao Miao, Laura R. LuidoltORCID iD, Peter Mindek, Renata RaidouORCID iD, Ivan ViolaORCID iD, Manuela WaldnerORCID iD, Eduard GröllerORCID iD
Visualization working group at TU Wien: Visibile Facimus Quod Ceteri Non Possunt
Visual Informatics, 5:76-84, March 2021. [paper]
Journal Paper (without talk)
2020
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
Multi-level Area Balancing of Clustered Graphs
IEEE Transactions on Visualization and Computer Graphics (TVCG), x:1-15, November 2020. [paper] [video]
Journal Paper (without talk)
Sebastian Mazza, Daniel Patel, Ivan ViolaORCID iD
Homomorphic-Encrypted Volume Rendering
IEEE Transactions on Visualization andComputer Graphics, 27:1-10, October 2020. [image] [Paper]
Journal Paper with Conference Talk
Elisa De Llano, Haichao Miao, Yasaman Ahmadi, Armanda J Wilson, Morgan Beeby, Ivan ViolaORCID iD, Ivan Barisic
Adenita: interactive 3D modelling and visualization of DNA nanostructures
Nucleic Acids Research, July 2020.
Journal Paper (without talk)
David Kouřil, Tobias Isenberg, Barbora Kozlikova, Miriah Meyer, Eduard GröllerORCID iD, Ivan ViolaORCID iD
HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models
IEEE Transactions on Visualization and Computer Graphics, 1:1-12, February 2020. [image] [Paper]
Journal Paper with Conference Talk
Sarkis Halladjian, Haichao Miao, David Kouřil, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Tobias Isenberg
ScaleTrotter: Illustrative Visual Travels Across Negative Scales
IEEE Transactions on Visualization and Computer Graphics, 26(1), January 2020. [paper]
Journal Paper with Conference Talk
Ngan Nguyen, Ondrej Strnad, Tobias Klein, Ruwayda Alharbi, Peter WonkaORCID iD, Martina Maritan, Peter Mindek, Ludovic Autin, David Goodsell, Ivan ViolaORCID iD
Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models
IEEE Transactions on Visualization and Computer Graphics, 2020.
Journal Paper with Conference Talk
2019
Tobias Klein, Peter Mindek, Ludovic Autin, David Goodsell, Arthur Olson, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Parallel Generation and Visualization of Bacterial Genome Structures
Computer Graphics Forum, 38(7):57-68, November 2019.
Journal Paper with Conference Talk
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
Graph Models for Biological Pathway Visualization: State of the Art and Future Challenges, 20. October 2019, Vis 2019 Workshop, Canada
[paper]
WorkshopTalk
1st Place Award, Creative Topic-"Meal Ingredients", of the 28th Annual Graph Drawing Contest Guangping Li, Soeren Nickel, Martin Nöllenburg, Ivan ViolaORCID iD, Hsiang-Yun WuORCID iD
World map of recipes
[poster]
Unknown Publication
Maximilian Sbardellati, Haichao Miao, Hsiang-Yun WuORCID iD, Eduard GröllerORCID iD, Ivan Barisic, Ivan ViolaORCID iD
Interactive Exploded Views for Molecular Structures
In Proceedings of the 9th Eurographics Workshop on Visual Computing for Biology and Medicine, pages 103-112. September 2019.
[paper]
Conference Paper
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
Map of Metabolic Harmony
[image-full]
Unknown Publication
Eric MörthORCID iD, Renata RaidouORCID iD, Ivan ViolaORCID iD, Noeska Natasja Smit
The Vitruvian Baby: Interactive Reformation of Fetal Ultrasound Data to a T-Position
Eurographics Workshop on Visual Computing for Biology and Medicine (2019), 9:201-205, September 2019.
Journal Paper with Conference Talk
Tobias Klein, Ivan ViolaORCID iD, Eduard GröllerORCID iD, Peter Mindek
Multi-Scale Procedural Animations of Microtubule Dynamics Based on Measured Data
IEEE Transactions on Visualization and Computer Graphics, 26(1):622-632, August 2019. [paper]
Journal Paper with Conference Talk
Haichao Miao, Elisa De Llano, Ivan ViolaORCID iD, Ivan Barisic
Interactive Visual Analysis for the Design of DNA Nanostructures
Poster shown at NANTECH 2019 – Nucleic Acid Nanotechnology: From Algorithmic Design to Biochemical Applications – Espoo, Finland (27. May 2019-29. May 2019)
Poster
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Filipa L. Sousa, Ivan ViolaORCID iD
Metabopolis: Scalable Network Layout for Biological Pathway Diagrams in Urban Map Style
BMC Bioinformatics, 20(187):1-20, May 2019. [paper] [video]
Journal Paper (without talk)
Hsiang-Yun WuORCID iD, Haichao Miao, Ivan ViolaORCID iD
From Cells to Atoms - Biological Information Visualization (in Chinese)
TR-193-02-2019-1, March 2019 [paper]
Technical Report
Multiple color zoom levels. Nicholas Waldin, Manuela WaldnerORCID iD, Mathieu Le Muzic, Eduard GröllerORCID iD, David Goodsell, Ludovic Autin, Arthur Olson, Ivan ViolaORCID iD
Cuttlefish: Color Mapping for Dynamic Multi‐Scale Visualizations
Computer Graphics Forum, 38(6):150-164, March 2019. [Open Access Article in Wiley Online Library]
Journal Paper (without talk)
David Kouřil, Ladislav Čmolík, Barbora Kozlikova, Hsiang-Yun WuORCID iD, Graham Johnson, David Goodsell, Arthur Olson, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments
IEEE Transactions on Visualization and Computer Graphics, 25:977-986, January 2019. [LoL-conference-presentation] [paper] [Conference Talk Recording]
Journal Paper with Conference Talk
Haichao Miao, Tobias Klein, David Kouřil, Peter Mindek, Karsten Schatz, Eduard GröllerORCID iD, Barbora Kozlikova, Tobias Isenberg, Ivan ViolaORCID iD
Multiscale Molecular Visualization
Journal of Molecular Biology, 6(31):1049-1070, January 2019. [Paper]
Journal Paper (without talk)
Tobias Klein, Ivan ViolaORCID iD, Peter Mindek
A Multi-Scale Animation Framework for Biological Fibrous Structures
Poster shown at EuroVis 2019 ()
Poster
2018
Artem Konev, Manuel Matusich, Ivan ViolaORCID iD, Hendrik Schulze, Daniel Cornel, Jürgen Waser
Fast cutaway visualization of sub-terrain tubular networks
Computers & Graphics, 75(5):25-35, October 2018.
Journal Paper (without talk)
Thomas Bernhard Koch, David Kouřil, Tobias Klein, Peter Mindek, Ivan ViolaORCID iD
Semantic Screen-Space Occlusion for Multiscale Molecular Visualization
Eurographics Workshop on Visual Computing for Biology and Medicine, September 2018. [paper]
Journal Paper with Conference Talk
Elisa De Llano, Haichao Miao, Tobias Isenberg, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Ivan Barisic
A Preview to Adenita: Visualization and Modeling of DNA Nanostructures
Poster shown at 3rd Functional DNA Nanotechnology Workshop ( 6. June 2018- 8. June 2018)
Poster
Haichao Miao, Elisa De Llano, Tobias Isenberg, Eduard GröllerORCID iD, Ivan Barisic, Ivan ViolaORCID iD
DimSUM: Dimension and Scale Unifying Maps for Visual Abstraction of DNA Origami Structures
Computer Graphics Forum, 37(3), June 2018. [Paper]
Journal Paper with Conference Talk
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
A Visual Comparison of Hand-Drawn and Machine-Generated Human Metabolic Pathways
Poster shown at EuroVis ( 4. June 2018- 8. June 2018)
[poster]
Poster
Katarína Furmanová, Jan Byska, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Jan J. Paleček, Barbora Kozlikova
COZOID: contact zone identifier for visual analysis of protein-protein interactions
BMC Bioinformatics, (19:125 ):1-25, April 2018. [image] [Paper]
Journal Paper (without talk)
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
The Travel of a Metabolite
submitted to PacificVis 2018 Data Story Telling Contest
[paper] [video]
Miscellaneous Publication
Patrik Polatsek, Manuela WaldnerORCID iD, Ivan ViolaORCID iD, Peter Kapec, Wanda Benesova
Exploring visual attention and saliency modeling for task-based visual analysis
Computers & Graphics, (2), February 2018. [paper]
Journal Paper (without talk)
Haichao Miao, Elisa De Llano, Johannes Sorger, Yasaman Ahmadi, Tadija Kekic, Tobias Isenberg, Eduard GröllerORCID iD, Ivan Barisic, Ivan ViolaORCID iD
Multiscale Visualization and Scale-adaptive Modification of DNA Nanostructures
IEEE Transactions on Visualization and Computer Graphics, 24(1), January 2018. [paper]
Journal Paper with Conference Talk
Tobias Klein, Ludovic Autin, Barbora Kozlikova, David Goodsell, Arthur Olson, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Instant Construction and Visualization of Crowded Biological Environments
IEEE Transactions on Visualization and Computer Graphics, 2018. [paper]
Journal Paper with Conference Talk
Kai Lawonn, Ivan ViolaORCID iD, Bernhard Preim, Tobias Isenberg
A Survey of Surface-Based Illustrative Rendering for Visualization
Computer Graphics Forum, (NN), 2018.
Journal Paper (without talk)
2017
Mateu Sbert, Han-Wei Shen, Ivan ViolaORCID iD, Min Chen, Anton Bardera, Miquel Feixas
Information Theory In Visualization, 30. November 2017, Bangkok, Thailand
[course notes]
Invited Talk
Ivan ViolaORCID iD, Tobias Isenberg
Pondering the Concept of Abstraction in (Illustrative) Visualization
IEEE Transactions on Visualization and Computer Graphics, (99), September 2017.
Journal Paper with Conference Talk
Jan Byska, Mathieu Le Muzic, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Barbora Kozlikova
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics
Poster shown at BioVis@ISMB 2017 (24. July 2017)
Poster
Daniel Gehrer, Ivan ViolaORCID iD
Visualization of molecular machinery using agent-based animation
In Proceedings of SCCG 2017. May 2017.
[paper]
Conference Paper
David Kouřil, Mathieu Le Muzic, Barbora Kozlikova, Ivan ViolaORCID iD
Maya2cellVIEW: Integrated Tool for Creating Large and Complex Molecular Scenes
Poster shown at Spring Conference on Computer Graphics 2017 (May 2017)
Poster
Ivan ViolaORCID iD, Martin Seyfert
Dynamic word clouds
In Proceedings of SCCG 2017. May 2017.
[image] [paper]
Conference Paper
Johannes Sorger, Peter Mindek, Peter Rautek, Eduard GröllerORCID iD, Graham Johnson, Ivan ViolaORCID iD
Metamorphers: Storytelling Templates For Illustrative Animated Transitions in Molecular Visualization
In Proceedings of the Spring Conference on Computer Graphics 2017, pages 27-36. May 2017.
[paper] [teaser] [video]
Conference Paper
Nicholas Waldin, Manuela WaldnerORCID iD, Ivan ViolaORCID iD
Flicker Observer Effect: Guiding Attention Through High Frequency Flicker in Images
Computer Graphics Forum, 36(2):467-476, May 2017. [paper]
Journal Paper with Conference Talk
Peter Mindek, Johannes Sorger, David Kouřil, Tobias Klein, Graham Johnson, Ivan ViolaORCID iD
The Birth of a Virtual Cell
submitted to the Pacific Vis 2017 Storytelling Contest
Miscellaneous Publication
Ivan Kolesár, Stefan BrucknerORCID iD, Ivan ViolaORCID iD, Helwig HauserORCID iD
A Fractional Cartesian Composition Model for Semi-Spatial ComparativeVisualization Design
IEEE Transactions on Visualization and Computer Graphics, 23(1), January 2017.
Journal Paper with Conference Talk
Peter Mindek, David Kouřil, Johannes Sorger, David Toloudis, Blair Lyons, Graham Johnson, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Visualization Multi-Pipeline for Communicating Biology
IEEE Transactions on Visualization and Computer Graphics, 24(1), 2017. [Paper] [Preview Movie] [Slides]
Journal Paper with Conference Talk
Viktor Vad, Jan Byska, Adam Jurcik, Ivan ViolaORCID iD, Eduard GröllerORCID iD, Helwig HauserORCID iD, Sergio M. Margues, Jiri Damborsky, Barbora Kozlikova
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics
In Eurographics Workshop on Visual Computing for Biology and Medicine 2017, pages 33-42. 2017.
Conference Paper
2016
Barbora Kozlikova, Michael Krone, Martin Falk, Norbert Lindow, Daniel Baum, Ivan ViolaORCID iD, Marc Baaden, Julius Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art Revisited
Computer Graphics Forum, (XX), November 2016.
Journal Paper (without talk)
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