Publications

92 Publications found:
Image Bib Reference Publication Type
2023
Johannes EschnerORCID iD, Peter Mindek, Manuela WaldnerORCID iD
Illustrative Motion Smoothing for Attention Guidance in Dynamic Visualizations
Computer Graphics Forum, 42(3):361-372, June 2023. [paper] [video] 		Journal Paper with Conference Talk
2022
Johannes EschnerORCID iD
Generating Molecular Motion Blur Videos for a User Study
[project report] 		Student Project
Pavol Ulbrich, Manuela WaldnerORCID iD, Katarína Furmanová, Sergio M. Margues, David Bednář, Barbora Kozlikova, Jan Byska
sMolBoxes: Dataflow Model for Molecular Dynamics Exploration
IEEE Transactions on Visualization and Computer Graphics:1-10, October 2022. [arxiv]		 Journal Paper with Conference Talk
2021
Ruwayda Alharbi, Ondrej Strnad, Laura R. LuidoltORCID iD, Manuela WaldnerORCID iD, David Kouřil, Ciril Bohak, Tobias Klein, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments
IEEE Transactions on Visualization and Computer Graphics:1-16, December 2021. [Image] [Paper] 		Journal Paper (without talk)
David Kouřil, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization
IEEE Transactions on Visualization and Computer Graphics, 1:1-1, November 2021. 		Journal Paper with Conference Talk
David Kouřil
Interactive Visualization of Dense and Multi-Scale Data for Science Outreach
Supervisor: Ivan ViolaORCID iD
Duration: March 2017 — April 2021
[teaser] [thesis] 		PhD-Thesis
Sarkis Halladjian, David Kouřil, Haichao Miao, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Tobias Isenberg
Multiscale Unfolding: Illustratively Visualizing the Whole Genome at a Glance
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS , 3:1-13, March 2021. [Image] [Paper] 		Journal Paper (without talk)
Henry EhlersORCID iD
Unknown
Supervisor: Renata RaidouORCID iD
Duration: 2021 — 2024
 Ongoing PhD-Thesis
2020
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
Multi-level Area Balancing of Clustered Graphs
IEEE Transactions on Visualization and Computer Graphics (TVCG), x:1-15, November 2020. [paper] [video] 		Journal Paper (without talk)
Ladislav Čmolík, Václav Pavlovec, Hsiang-Yun WuORCID iD, Martin Nöllenburg
Mixed Labeling: Integrating Internal and External Labels
IEEE Transactions on Visualization and Computer Graphics (TVCG), x:1-14, September 2020. [image] [paper] 		Journal Paper (without talk)
Milena Nowak
Hierarchical Multi-resolution Data Structure for Molecular Visualization
[Image] [Master Thesis] 		Master Thesis
Elisa De Llano, Haichao Miao, Yasaman Ahmadi, Armanda J Wilson, Morgan Beeby, Ivan ViolaORCID iD, Ivan Barisic
Adenita: interactive 3D modelling and visualization of DNA nanostructures
Nucleic Acids Research, July 2020. 		Journal Paper (without talk)
Renata RaidouORCID iD, Barbora Kozlikova, Johanna BeyerORCID iD, Timo Ropinski, Issei Fujishiro
NII Shonan Meeting Report No. 167: Formalizing Biological and Medical Visualization
ISSN 2186-7437
 Miscellaneous Publication
Sarkis Halladjian, Haichao Miao, David Kouřil, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Tobias Isenberg
ScaleTrotter: Illustrative Visual Travels Across Negative Scales
IEEE Transactions on Visualization and Computer Graphics, 26(1), January 2020. [paper] 		Journal Paper with Conference Talk
Ngan Nguyen, Ondrej Strnad, Tobias Klein, Ruwayda Alharbi, Peter WonkaORCID iD, Martina Maritan, Peter Mindek, Ludovic Autin, David Goodsell, Ivan ViolaORCID iD
Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models
IEEE Transactions on Visualization and Computer Graphics, 2020. 		Journal Paper with Conference Talk
2019
Tobias Klein
Instant Construction of Atomistic Models for Visualization in Integrative Cell Biology
Supervisor: Ivan ViolaORCID iD
Duration: 2016 — 2019
[image] 		PhD-Thesis
Tobias Klein, Peter Mindek, Ludovic Autin, David Goodsell, Arthur Olson, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Parallel Generation and Visualization of Bacterial Genome Structures
Computer Graphics Forum, 38(7):57-68, November 2019. 		Journal Paper with Conference Talk
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
Graph Models for Biological Pathway Visualization: State of the Art and Future Challenges, 20. October 2019, Vis 2019 Workshop, Canada
[paper] 		WorkshopTalk
Susanne Rinortner
Visualizing Protein Interactions in Corresponding Compartments
 Bachelor Thesis
Aleksandr Amirkhanov, Ilona Kosiuk, Peter Szmolyan, Artem Amirkhanov, Gabriel Mistelbauer, Eduard GröllerORCID iD, Renata RaidouORCID iD
ManyLands: A Journey Across 4D Phase Space of Trajectories
Computer Graphics Forum, 38(7):191-202, October 2019. [Paper] [Video demo] 		Journal Paper with Conference Talk
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
Map of Metabolic Harmony
[image-full] 		Unknown Publication
Maximilian Sbardellati, Haichao Miao, Hsiang-Yun WuORCID iD, Eduard GröllerORCID iD, Ivan Barisic, Ivan ViolaORCID iD
Interactive Exploded Views for Molecular Structures
In Proceedings of the 9th Eurographics Workshop on Visual Computing for Biology and Medicine, pages 103-112. September 2019.
[paper] 		Conference Paper
Haichao Miao
Geometric Abstraction for Effective Visualization and Modeling
Supervisor: Ivan ViolaORCID iD
 PhD-Thesis
Tobias Klein, Ivan ViolaORCID iD, Eduard GröllerORCID iD, Peter Mindek
Multi-Scale Procedural Animations of Microtubule Dynamics Based on Measured Data
IEEE Transactions on Visualization and Computer Graphics, 26(1):622-632, August 2019. [paper] 		Journal Paper with Conference Talk
Renata RaidouORCID iD
Visual Analytics for the Representation, Exploration and Analysis of High-Dimensional, Multi-Faceted Medical Data
In Biomedical Visualisation, pages 137-162, July 2019 		Article in a Book
Jan Byska, Thomas Trautner, Sergio Marques, Jiri Damborsky, Barbora Kozlikova, Manuela WaldnerORCID iD
Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization
Computer Graphics Forum, 38(3):441-453, June 2019. [paper] [video] 		Journal Paper with Conference Talk
Haichao Miao, Elisa De Llano, Ivan ViolaORCID iD, Ivan Barisic
Interactive Visual Analysis for the Design of DNA Nanostructures
Poster shown at NANTECH 2019 – Nucleic Acid Nanotechnology: From Algorithmic Design to Biochemical Applications – Espoo, Finland (27. May 2019-29. May 2019)
Poster
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Filipa L. Sousa, Ivan ViolaORCID iD
Metabopolis: Scalable Network Layout for Biological Pathway Diagrams in Urban Map Style
BMC Bioinformatics, 20(187):1-20, May 2019. [paper] [video]		 Journal Paper (without talk)
Hsiang-Yun WuORCID iD, Haichao Miao, Ivan ViolaORCID iD
From Cells to Atoms - Biological Information Visualization (in Chinese)
TR-193-02-2019-1, March 2019 [paper] 		Technical Report
Multiple color zoom levels. Nicholas Waldin, Manuela WaldnerORCID iD, Mathieu Le Muzic, Eduard GröllerORCID iD, David Goodsell, Ludovic Autin, Arthur Olson, Ivan ViolaORCID iD
Cuttlefish: Color Mapping for Dynamic Multi‐Scale Visualizations
Computer Graphics Forum, 38(6):150-164, March 2019. [Open Access Article in Wiley Online Library]		 Journal Paper (without talk)
Felix Kugler
Profiling and Optimization of Large Biomolecular Scenes
[image] [thesis] 		Bachelor Thesis
Katharina Unger
Visual Comparison of Organism-Specific Metabolic Pathways
[CESCG paper] 		Student Project
Johannes Weissenböck, Bernhard Fröhler, Eduard GröllerORCID iD, Johann Kastner, Christoph Heinzl
Dynamic Volume Lines: Visual Comparison of 3D Volumes through Space-filling Curves
IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS, 25(1):1040-1049, January 2019. [image] 		Journal Paper (without talk)
Haichao Miao, Tobias Klein, David Kouřil, Peter Mindek, Karsten Schatz, Eduard GröllerORCID iD, Barbora Kozlikova, Tobias Isenberg, Ivan ViolaORCID iD
Multiscale Molecular Visualization
Journal of Molecular Biology, 6(31):1049-1070, January 2019. [Paper] 		Journal Paper (without talk)
Aleksandr Amirkhanov, Ilona Kosiuk, Peter Szmolyan, Artem Amirkhanov, Gabriel Mistelbauer, Eduard GröllerORCID iD, Renata RaidouORCID iD
EG VCBM 2019 Image Contest Award, people's choice—ManyLands: A Journey Across 4D Phase Space of Biological Systems
 Unknown Publication
2018
Peter Mindek
Molecular Visualization, 10. November 2018, FYI: Informationsdesign Konferenz Wien, Nordbahn-Halle, Vienna
 WorkshopTalk
Maximilian Sbardellati
Interactive Exploded Views for Presenting DNA Nano-Structures
[image] 		Bachelor Thesis
Thomas Trautner
Importance-Driven Exploration of Molecular Dynamics Simulations
[image] [Poster] 		Master Thesis
Nicolas Grossmann, Thomas Köppel, Eduard GröllerORCID iD, Renata RaidouORCID iD
VisualFlatter - Visual Analysis of Distortions in the Projection of Biomedical Structures
Eurographics Proceedings, September 2018. 		Journal Paper with Conference Talk
Elisa De Llano, Haichao Miao, Tobias Isenberg, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Ivan Barisic
A Preview to Adenita: Visualization and Modeling of DNA Nanostructures
Poster shown at 3rd Functional DNA Nanotechnology Workshop ( 6. June 2018- 8. June 2018)
Poster
Haichao Miao, Elisa De Llano, Tobias Isenberg, Eduard GröllerORCID iD, Ivan Barisic, Ivan ViolaORCID iD
DimSUM: Dimension and Scale Unifying Maps for Visual Abstraction of DNA Origami Structures
Computer Graphics Forum, 37(3), June 2018. [Paper] 		Journal Paper with Conference Talk
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
A Visual Comparison of Hand-Drawn and Machine-Generated Human Metabolic Pathways
Poster shown at EuroVis ( 4. June 2018- 8. June 2018)
[poster] 		Poster
Katarína Furmanová, Jan Byska, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Jan J. Paleček, Barbora Kozlikova
COZOID: contact zone identifier for visual analysis of protein-protein interactions
BMC Bioinformatics, (19:125 ):1-25, April 2018. [image] [Paper] 		Journal Paper (without talk)
Hsiang-Yun WuORCID iD, Martin Nöllenburg, Ivan ViolaORCID iD
The Travel of a Metabolite
submitted to PacificVis 2018 Data Story Telling Contest
[paper] [video] 		Miscellaneous Publication
Thomas Bernhard Koch
Semantic Screen-Space Occlusion for Multiscale Molecular Visualization
[Bachelor Thesis] 		Bachelor Thesis
Julian Strohmayer
A Visual Analytics Approach to Hypocotyl/Root Transition Detection in Arabidopsis Thaliana
[image] 		Bachelor Thesis
Haichao Miao, Elisa De Llano, Johannes Sorger, Yasaman Ahmadi, Tadija Kekic, Tobias Isenberg, Eduard GröllerORCID iD, Ivan Barisic, Ivan ViolaORCID iD
Multiscale Visualization and Scale-adaptive Modification of DNA Nanostructures
IEEE Transactions on Visualization and Computer Graphics, 24(1), January 2018. [paper] 		Journal Paper with Conference Talk
Lukas LippORCID iD
Visualization of Fiber Orientation in Glass Fiber Reinforced Polymers
[Bachelor Thesis] 		Bachelor Thesis
Radu Jianu, Martin Krzywinski, Luana Micallef, Hsiang-Yun WuORCID iD
Mapifying the Genome, Scalable Set Visualizations (Dagstuhl Seminar 17332)
TR-193-02-2018-2, 2018 [paper] 		Technical Report
Stefan Dietrich
Smart Visibility Technique for Linear and Planar Molecular Assemblies
 Bachelor Thesis
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