Image |
Bib Reference |
Publication Type |
2018 |
![](https://www.cg.tuwien.ac.at/research/publications/2018/klein_2017_IM/klein_2017_IM-image:thumb100.png) |
Tobias Klein, Ludovic Autin, Barbora Kozlikova, David Goodsell, Arthur Olson, Eduard Gröller , Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Instant Construction and Visualization of Crowded Biological Environments
IEEE Transactions on Visualization and Computer Graphics, 2018. [ paper] |
Journal Paper with Conference Talk |
2017 |
![](https://www.cg.tuwien.ac.at/research/publications/2017/sorger-2017-thesis/sorger-2017-thesis-overview:thumb100.png) |
Johannes Sorger
Integration Strategies in the Visualization of Multifaceted Spatial Data
Supervisor: Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Duration: 2013 — 2017
[ thesis] |
PhD-Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2017/Dietrich_1/Dietrich_1-image:thumb100.png) |
Stefan Dietrich
SirTom - Structural information retaining Triangle-based Occlusion Management
[ Bachelor Thesis] [ image] |
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2017/stappen_2017_animatedcomic/stappen_2017_animatedcomic-teaser:thumb100.png) |
Stefan Stappen
Hybrid Frames - Animated Narrative Sequences in Molecular Visualization
[ teaser] [ thesis] |
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2017/Escribano_2017/Escribano_2017-image:thumb100.png) |
Guillermo Garcia-Escribano
Visual Evaluation of Computational Models of the Biological Mesoscale
|
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2017/Gehrer-2017-molmach/Gehrer-2017-molmach-image:thumb100.png) |
Daniel Gehrer, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Visualization of molecular machinery using agent-based animation
In Proceedings of SCCG 2017. May 2017.
[ paper] |
Conference Paper |
![](https://www.cg.tuwien.ac.at/research/publications/2017/kouril-2017-sccgposter/kouril-2017-sccgposter-teaser:thumb100.png) |
David Kouřil, Mathieu Le Muzic, Barbora Kozlikova, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Maya2cellVIEW: Integrated Tool for Creating Large and Complex Molecular Scenes
Poster shown at Spring Conference on Computer Graphics 2017
(May 2017)
|
Poster |
![](https://www.cg.tuwien.ac.at/research/publications/2017/sorger_2017_metamorphers/sorger_2017_metamorphers-teaser:thumb100.png) |
Johannes Sorger, Peter Mindek, Peter Rautek, Eduard Gröller , Graham Johnson, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Metamorphers: Storytelling Templates For Illustrative Animated Transitions in Molecular Visualization
In Proceedings of the Spring Conference on Computer Graphics 2017, pages 27-36. May 2017.
[ paper] [ teaser] [ video] |
Conference Paper |
![](https://www.cg.tuwien.ac.at/research/publications/2017/Gehrer-2017/Gehrer-2017-image:thumb100.png) |
Daniel Gehrer
Visualization of molecular machinery using agent-based animation
[ image] [ Master thesis] |
Master Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2017/mindek-2017-virtualcell/mindek-2017-virtualcell-teaser:thumb100.png) |
Peter Mindek, Johannes Sorger, David Kouřil, Tobias Klein, Graham Johnson, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
The Birth of a Virtual Cell
submitted to the Pacific Vis 2017 Storytelling Contest
|
Miscellaneous Publication |
![](https://www.cg.tuwien.ac.at/research/publications/2017/miao_inria_2017/miao_inria_2017-:thumb100.png) |
Haichao Miao
Visualization and Modeling in DNA Nanotechnology,
April 2017, Inria, Grenoble, France
|
Invited Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2017/Mitterhofer_2017/Mitterhofer_2017-image:thumb100.png) |
Lukas Mitterhofer
Modeling Microorganisms
[ Bachelor Thesis] [ image] |
Bachelor Thesis |
|
Ivan Kolesár, Stefan Bruckner , Ivan Viola , Helwig Hauser![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
A Fractional Cartesian Composition Model for Semi-Spatial ComparativeVisualization Design
IEEE Transactions on Visualization and Computer Graphics, 23(1), January 2017. |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2017/kouril-2015-maya2cellview/kouril-2015-maya2cellview-teaser:thumb100.png) |
David Kouřil
Maya2CellVIEW: 3D Package Integrated Tool for Creating Large and Complex Molecular Scenes
|
Master Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2017/miao_stateKeylabTalk_2017/miao_stateKeylabTalk_2017-:thumb100.png) |
Haichao Miao
Visualization of Brain Arteries, the Placenta and DNA Nanostructures in the Context of Abstraction,
2017, State Key Lab - Zhejiang University
|
Invited Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2017/mindek-2017-marion/mindek-2017-marion-:thumb100.png) |
Peter Mindek, David Kouřil, Johannes Sorger, David Toloudis, Blair Lyons, Graham Johnson, Eduard Gröller , Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Visualization Multi-Pipeline for Communicating Biology
IEEE Transactions on Visualization and Computer Graphics, 24(1), 2017. [ Paper] [ Preview Movie] [ Slides] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2017/vad_viktor-2017-WVE/vad_viktor-2017-WVE-:thumb100.png) |
Viktor Vad, Jan Byska, Adam Jurcik, Ivan Viola , Eduard Gröller , Helwig Hauser , Sergio M. Margues, Jiri Damborsky, Barbora Kozlikova
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics
In Eurographics Workshop on Visual Computing for Biology and Medicine 2017, pages 33-42. 2017.
|
Conference Paper |
2016 |
![](https://www.cg.tuwien.ac.at/research/publications/2016/mindek-xmas-card-2016/mindek-xmas-card-2016-Picture:thumb100.png) |
Ludovic Autin, Peter Mindek
X-Mas Card 2016
[ Picture] [ X-Mas Card] |
X-Mas Card |
|
Barbora Kozlikova, Michael Krone, Martin Falk, Norbert Lindow, Daniel Baum, Ivan Viola , Marc Baaden, Julius Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art Revisited
Computer Graphics Forum, (XX), November 2016. |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2016/sorger-2016-fowardabstraction/sorger-2016-fowardabstraction-teaser:thumb100.png) |
Johannes Sorger, Peter Mindek, Tobias Klein, Graham Johnson, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Illustrative Transitions in Molecular Visualization via Forward and Inverse Abstraction Transform
In Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), pages 21-30. September 2016.
[ paper] [ video] |
Conference Paper |
![](https://www.cg.tuwien.ac.at/research/publications/2016/mindek-2016-utah-talk/mindek-2016-utah-talk-Teaser 1:thumb100.png) |
Peter Mindek
Multi-Scale Molecular Data Visualization,
3. May 2016, QCB Workshop on Visualizing & Modeling Cell Biology, Salt Lake City, Utah, USA
[ Slides] |
WorkshopTalk |
![](https://www.cg.tuwien.ac.at/research/publications/2016/Viola_Ivan_2015_AAM/Viola_Ivan_2015_AAM-Image:thumb100.png) |
Jan Byska, Mathieu Le Muzic, Eduard Gröller , Ivan Viola , Barbora Kozlikova
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics
IEEE Transactions on Visualization and Computer Graphics, 22(1):747-756, January 2016. [ Paper] |
Journal Paper with Conference Talk |
|
Viktor Vad, Douglas Cedrim, Wolfgang Busch, Peter Filzmoser, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Generalized box-plot for root growth ensembles
BMC Bioinformatics, 2016. |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2016/glinzner-2016-tex/glinzner-2016-tex-image:thumb100.png) |
Matthias Glinzner
Texturing of 3D Objects using Simple Physics and Equilateral Triangle Patches
[ paper] |
Bachelor Thesis |
![](https://www.cg.tuwien.ac.at/research/publications/2016/lemuzic-mindek-2016-viseq/lemuzic-mindek-2016-viseq-Preview:thumb100.png) |
Mathieu Le Muzic, Peter Mindek, Johannes Sorger, Ludovic Autin, David Goodsell, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Visibility Equalizer: Cutaway Visualization of Mesoscopic Biological Models
Computer Graphics Forum, 35(3), 2016. [ Paper] [ Slides] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2016/Krone2016VABC/Krone2016VABC-image:thumb100.png) |
Michael Krone, Barbora Kozlikova, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Visual Analysis of Biomolecular Cavities: State of the Art
Computer Graphics Forum, 35(3):527-551, 2016. [ paper] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2016/Reisacher2016/Reisacher2016-image:thumb100.png) |
Matthias Reisacher, Mathieu Le Muzic, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
CellPathway: A Simulation Tool for Illustrative Visualization of Biochemical Networks
In Proceedings of WSCG. 2016.
[ paper] |
Conference Paper |
2015 |
![](https://www.cg.tuwien.ac.at/research/publications/2015/cellVIEW_2015/cellVIEW_2015-:thumb100.png) |
Mathieu Le Muzic, Ludovic Autin, Julius Parulek, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
cellVIEW: a Tool for Illustrative and Multi-Scale Rendering of Large Biomolecular Datasets
In Eurographics Workshop on Visual Computing for Biology and Medicine, pages 61-70. September 2015.
[ ] [ paper] |
Conference Paper |
![](https://www.cg.tuwien.ac.at/research/publications/2015/Viola_Ivan_2015_MCT/Viola_Ivan_2015_MCT-Image:thumb100.png) |
Jan Byska, Adam Jurcik, Eduard Gröller , Ivan Viola , Barbora Kozlikova
MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids
Computer Graphics Forum, 3(34):1-10, May 2015. [ Paper] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2015/Viola_Ivan_2015_VBS/Viola_Ivan_2015_VBS-Image:thumb100.png) |
Barbora Kozlikova, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola , Julius Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art
In Eurographics Conference on Visualization (EuroVis) - STARs, pages 061-081. May 2015.
[ Paper] |
Conference Paper |
![](https://www.cg.tuwien.ac.at/research/publications/2015/lemuzic_2015_timelapse/lemuzic_2015_timelapse-screenshot:thumb100.png) |
Mathieu Le Muzic, Manuela Waldner , Julius Parulek, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Illustrative Timelapse: A Technique for Illustrative Visualization of Particle Simulations on the Mesoscale Level
In Visualization Symposium (PacificVis), 2015 IEEE Pacific, pages 247-254. April 2015.
[ paper] [ screenshot] |
Conference Paper |
2014 |
![](https://www.cg.tuwien.ac.at/research/publications/2014/waldner-2014-af/waldner-2014-af-:thumb100.png) |
Manuela Waldner , Mathieu Le Muzic, Matthias Bernhard, Werner Purgathofer , Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Attractive Flicker: Guiding Attention in Dynamic Narrative Visualizations
IEEE Transactions on Visualization and Computer Graphics, 20(12):2456-2465, December 2014. [ paper] [ Preview video] [ Submission video] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2014/Viola_Ivan_IIP/Viola_Ivan_IIP-:thumb100.png) |
Ivan Kolesár, Julius Parulek, Ivan Viola , Stefan Bruckner , Anne-Kristin Stavrum, Helwig Hauser![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Interactively illustrating polymerization using three-level model fusion
BMC Bioinformatics 2014, 15(345):1-16, October 2014. |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2014/kolesar-ivan-2014-polymers/kolesar-ivan-2014-polymers-image:thumb100.png) |
Ivan Kolesár, Julius Parulek, Ivan Viola , Stefan Bruckner , Anne-Kristin Stavrum, Helwig Hauser![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Illustrating Polymerization using Three-level Model Fusion
In Proceedings of IEEE BioVis 2014, pages 1-22. July 2014.
|
Conference Paper |
![](https://www.cg.tuwien.ac.at/research/publications/2014/lemuzic-2014-ivm/lemuzic-2014-ivm-image:thumb100.png) |
Mathieu Le Muzic, Julius Parulek, Anne-Kristin Stavrum, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Illustrative Visualization of Molecular Reactions using Omniscient Intelligence and Passive Agents
Computer Graphics Forum, 33(3):141-150, June 2014. [ paper] [ video] |
Journal Paper with Conference Talk |
![](https://www.cg.tuwien.ac.at/research/publications/2014/Viola_Ivan_CLD/Viola_Ivan_CLD-:thumb100.png) |
Julius Parulek, Daniel Jönsson, Timo Ropinski, Stefan Bruckner , Anders Ynnerman, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Continuous Levels-of-Detail and Visual Abstraction for Seamless Molecular Visualization
Computer Graphics Forum, 33(6):276-287, May 2014. |
Journal Paper (without talk) |
2013 |
![](https://www.cg.tuwien.ac.at/research/publications/2013/Viola_Ivan_2013_VCA/Viola_Ivan_2013_VCA-Image:thumb100.png) |
Julius Parulek, Cagatay Turkay, Nathalie Reuter, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Visual cavity analysis in molecular simulations
BMC Bioinformatics, 14(Suppl 19:S4 ):1-15, November 2013. [ Paper] |
Journal Paper (without talk) |
![](https://www.cg.tuwien.ac.at/research/publications/2013/sorger-2013-neuromap/sorger-2013-neuromap-teaser:thumb100.png) |
Johannes Sorger, Katja Bühler, Florian Schulze, Tianxiao Liu, Barry Dickson
neuroMAP - Interactive Graph-Visualization of the Fruit Fly's Neural Circuit
In Biological Data Visualization (BioVis), 2013 IEEE Symposium on , pages 73-80. October 2013.
|
Conference Paper |
![](https://www.cg.tuwien.ac.at/research/publications/2013/Viola_Ivan_2013_SVA/Viola_Ivan_2013_SVA-:thumb100.png) |
Julius Parulek, Timo Ropinski, Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Seamless Visual Abstraction of Molecular Surfaces
In SCCG 2013 - 29th Proceedings Spring conference on Computer Graphics, pages 120-127. May 2013.
[ Paper] |
Conference Paper |
![](https://www.cg.tuwien.ac.at/research/publications/2013/Sorger_2013_nMI/Sorger_2013_nMI-Image:thumb100.png) |
Johannes Sorger
neuroMap - Interactive Graph-Visualization of the Fruit Fly’s Neural Circuit
[ Poster] [ Thesis] |
Master Thesis |
undated |
|
Viktor Vad
Visualization in Root Phenotyping
Supervisor: Ivan Viola![ORCID iD](https://www.cg.tuwien.ac.at/research/publications/images/ORCID_iD.svg)
Duration: March 2015 — 2017
|
Ongoing PhD-Thesis |
|
Martina Rasch
Image-Space Solvent-Excluded Surface Visualization
|
Ongoing Master Thesis |