Publications

92 Publications found:
Image Bib Reference Publication Type
2018
Tobias Klein, Ludovic Autin, Barbora Kozlikova, David Goodsell, Arthur Olson, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Instant Construction and Visualization of Crowded Biological Environments
IEEE Transactions on Visualization and Computer Graphics, 2018. [paper] 		Journal Paper with Conference Talk
2017
Johannes Sorger
Integration Strategies in the Visualization of Multifaceted Spatial Data
Supervisor: Ivan ViolaORCID iD
Duration: 2013 — 2017
[thesis] 		PhD-Thesis
Stefan Dietrich
SirTom - Structural information retaining Triangle-based Occlusion Management
[Bachelor Thesis] [image] 		Bachelor Thesis
Stefan Stappen
Hybrid Frames - Animated Narrative Sequences in Molecular Visualization
[teaser] [thesis] 		Bachelor Thesis
Guillermo Garcia-Escribano
Visual Evaluation of Computational Models of the Biological Mesoscale
 Bachelor Thesis
Daniel Gehrer, Ivan ViolaORCID iD
Visualization of molecular machinery using agent-based animation
In Proceedings of SCCG 2017. May 2017.
[paper] 		Conference Paper
David Kouřil, Mathieu Le Muzic, Barbora Kozlikova, Ivan ViolaORCID iD
Maya2cellVIEW: Integrated Tool for Creating Large and Complex Molecular Scenes
Poster shown at Spring Conference on Computer Graphics 2017 (May 2017)
Poster
Johannes Sorger, Peter Mindek, Peter Rautek, Eduard GröllerORCID iD, Graham Johnson, Ivan ViolaORCID iD
Metamorphers: Storytelling Templates For Illustrative Animated Transitions in Molecular Visualization
In Proceedings of the Spring Conference on Computer Graphics 2017, pages 27-36. May 2017.
[paper] [teaser] [video] 		Conference Paper
Daniel Gehrer
Visualization of molecular machinery using agent-based animation
[image] [Master thesis] 		Master Thesis
Peter Mindek, Johannes Sorger, David Kouřil, Tobias Klein, Graham Johnson, Ivan ViolaORCID iD
The Birth of a Virtual Cell
submitted to the Pacific Vis 2017 Storytelling Contest
 Miscellaneous Publication
Haichao Miao
Visualization and Modeling in DNA Nanotechnology, April 2017, Inria, Grenoble, France
 Invited Talk
Lukas Mitterhofer
Modeling Microorganisms
[Bachelor Thesis] [image] 		Bachelor Thesis
Ivan Kolesár, Stefan BrucknerORCID iD, Ivan ViolaORCID iD, Helwig HauserORCID iD
A Fractional Cartesian Composition Model for Semi-Spatial ComparativeVisualization Design
IEEE Transactions on Visualization and Computer Graphics, 23(1), January 2017. 		Journal Paper with Conference Talk
David Kouřil
Maya2CellVIEW: 3D Package Integrated Tool for Creating Large and Complex Molecular Scenes
 Master Thesis
Haichao Miao
Visualization of Brain Arteries, the Placenta and DNA Nanostructures in the Context of Abstraction, 2017, State Key Lab - Zhejiang University
 Invited Talk
Peter Mindek, David Kouřil, Johannes Sorger, David Toloudis, Blair Lyons, Graham Johnson, Eduard GröllerORCID iD, Ivan ViolaORCID iD
Visualization Multi-Pipeline for Communicating Biology
IEEE Transactions on Visualization and Computer Graphics, 24(1), 2017. [Paper] [Preview Movie] [Slides] 		Journal Paper with Conference Talk
Viktor Vad, Jan Byska, Adam Jurcik, Ivan ViolaORCID iD, Eduard GröllerORCID iD, Helwig HauserORCID iD, Sergio M. Margues, Jiri Damborsky, Barbora Kozlikova
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics
In Eurographics Workshop on Visual Computing for Biology and Medicine 2017, pages 33-42. 2017.
 Conference Paper
2016
Ludovic Autin, Peter Mindek
X-Mas Card 2016
[Picture] [X-Mas Card] 		X-Mas Card
Barbora Kozlikova, Michael Krone, Martin Falk, Norbert Lindow, Daniel Baum, Ivan ViolaORCID iD, Marc Baaden, Julius Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art Revisited
Computer Graphics Forum, (XX), November 2016. 		Journal Paper (without talk)
Johannes Sorger, Peter Mindek, Tobias Klein, Graham Johnson, Ivan ViolaORCID iD
Illustrative Transitions in Molecular Visualization via Forward and Inverse Abstraction Transform
In Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), pages 21-30. September 2016.
[paper] [video] 		Conference Paper
Peter Mindek
Multi-Scale Molecular Data Visualization, 3. May 2016, QCB Workshop on Visualizing & Modeling Cell Biology, Salt Lake City, Utah, USA
[Slides] 		WorkshopTalk
Jan Byska, Mathieu Le Muzic, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Barbora Kozlikova
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics
IEEE Transactions on Visualization and Computer Graphics, 22(1):747-756, January 2016. [Paper] 		Journal Paper with Conference Talk
Viktor Vad, Douglas Cedrim, Wolfgang Busch, Peter Filzmoser, Ivan ViolaORCID iD
Generalized box-plot for root growth ensembles
BMC Bioinformatics, 2016. 		Journal Paper with Conference Talk
Matthias Glinzner
Texturing of 3D Objects using Simple Physics and Equilateral Triangle Patches
[paper] 		Bachelor Thesis
Mathieu Le Muzic, Peter Mindek, Johannes Sorger, Ludovic Autin, David Goodsell, Ivan ViolaORCID iD
Visibility Equalizer: Cutaway Visualization of Mesoscopic Biological Models
Computer Graphics Forum, 35(3), 2016. [Paper] [Slides] 		Journal Paper with Conference Talk
Michael Krone, Barbora Kozlikova, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, Ivan ViolaORCID iD
Visual Analysis of Biomolecular Cavities: State of the Art
Computer Graphics Forum, 35(3):527-551, 2016. [paper] 		Journal Paper with Conference Talk
Matthias Reisacher, Mathieu Le Muzic, Ivan ViolaORCID iD
CellPathway: A Simulation Tool for Illustrative Visualization of Biochemical Networks
In Proceedings of WSCG. 2016.
[paper] 		Conference Paper
2015
Mathieu Le Muzic, Ludovic Autin, Julius Parulek, Ivan ViolaORCID iD
cellVIEW: a Tool for Illustrative and Multi-Scale Rendering of Large Biomolecular Datasets
In Eurographics Workshop on Visual Computing for Biology and Medicine, pages 61-70. September 2015.
[] [paper] 		Conference Paper
Jan Byska, Adam Jurcik, Eduard GröllerORCID iD, Ivan ViolaORCID iD, Barbora Kozlikova
MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids
Computer Graphics Forum, 3(34):1-10, May 2015. [Paper] 		Journal Paper with Conference Talk
Barbora Kozlikova, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan ViolaORCID iD, Julius Parulek, Hans-Christian Hege
Visualization of Biomolecular Structures: State of the Art
In Eurographics Conference on Visualization (EuroVis) - STARs, pages 061-081. May 2015.
[Paper] 		Conference Paper
Mathieu Le Muzic, Manuela WaldnerORCID iD, Julius Parulek, Ivan ViolaORCID iD
Illustrative Timelapse: A Technique for Illustrative Visualization of Particle Simulations on the Mesoscale Level
In Visualization Symposium (PacificVis), 2015 IEEE Pacific, pages 247-254. April 2015.
[paper] [screenshot] 		Conference Paper
2014
Manuela WaldnerORCID iD, Mathieu Le Muzic, Matthias Bernhard, Werner PurgathoferORCID iD, Ivan ViolaORCID iD
Attractive Flicker: Guiding Attention in Dynamic Narrative Visualizations
IEEE Transactions on Visualization and Computer Graphics, 20(12):2456-2465, December 2014. [paper] [Preview video] [Submission video] 		Journal Paper with Conference Talk
Ivan Kolesár, Julius Parulek, Ivan ViolaORCID iD, Stefan BrucknerORCID iD, Anne-Kristin Stavrum, Helwig HauserORCID iD
Interactively illustrating polymerization using three-level model fusion
BMC Bioinformatics 2014, 15(345):1-16, October 2014. 		Journal Paper (without talk)
Ivan Kolesár, Julius Parulek, Ivan ViolaORCID iD, Stefan BrucknerORCID iD, Anne-Kristin Stavrum, Helwig HauserORCID iD
Illustrating Polymerization using Three-level Model Fusion
In Proceedings of IEEE BioVis 2014, pages 1-22. July 2014.
 Conference Paper
Mathieu Le Muzic, Julius Parulek, Anne-Kristin Stavrum, Ivan ViolaORCID iD
Illustrative Visualization of Molecular Reactions using Omniscient Intelligence and Passive Agents
Computer Graphics Forum, 33(3):141-150, June 2014. [paper] [video] 		Journal Paper with Conference Talk
Julius Parulek, Daniel Jönsson, Timo Ropinski, Stefan BrucknerORCID iD, Anders Ynnerman, Ivan ViolaORCID iD
Continuous Levels-of-Detail and Visual Abstraction for Seamless Molecular Visualization
Computer Graphics Forum, 33(6):276-287, May 2014. 		Journal Paper (without talk)
2013
Julius Parulek, Cagatay Turkay, Nathalie Reuter, Ivan ViolaORCID iD
Visual cavity analysis in molecular simulations
BMC Bioinformatics, 14(Suppl 19:S4 ):1-15, November 2013. [Paper] 		Journal Paper (without talk)
Johannes Sorger, Katja BühlerORCID iD, Florian Schulze, Tianxiao Liu, Barry Dickson
neuroMAP - Interactive Graph-Visualization of the Fruit Fly's Neural Circuit
In Biological Data Visualization (BioVis), 2013 IEEE Symposium on , pages 73-80. October 2013.
 Conference Paper
Julius Parulek, Timo Ropinski, Ivan ViolaORCID iD
Seamless Visual Abstraction of Molecular Surfaces
In SCCG 2013 - 29th Proceedings Spring conference on Computer Graphics, pages 120-127. May 2013.
[Paper] 		Conference Paper
Johannes Sorger
neuroMap - Interactive Graph-Visualization of the Fruit Fly’s Neural Circuit
[Poster] [Thesis] 		Master Thesis
undated
Viktor Vad
Visualization in Root Phenotyping
Supervisor: Ivan ViolaORCID iD
Duration: March 2015 — 2017
 Ongoing PhD-Thesis
Martina Rasch
Image-Space Solvent-Excluded Surface Visualization
 Ongoing Master Thesis
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